bowtie2build
Create Bowtie 2 index files from reference sequences
Syntax
Description
bowtie2build(
builds Bowtie2 index files from the reference sequence information saved in the FASTA files specified byreferenceFileNames
,indexBaseName
)referenceFileNames
.
bowtie2build
requires theBowtie 2 Support Package for Bioinformatics Toolbox™. If this support package is not installed, then the function provides a downloadlink. For details, seeBioinformatics Toolbox Software Support Packages.
bowtie2build(___,
uses the additional options specified bybuildOptions
)buildOptions
. Specify these options after all other input arguments.
Examples
Input Arguments
Output Arguments
References
[1] Langmead, B., and S. Salzberg. "Fast gapped-read alignment with Bowtie 2."Nature Methods. 9, 2012, 357–359.
Version History
See Also
bowtie2
|bowtie2inspect
|Bowtie2AlignOptions
|Bowtie2BuildOptions
|Bowtie2InspectOptions
|featurecount
|铜fflinks